S. aureus
|
Blood |
Cefoxitin, erythromycin, clindamycin, quinupristin-dalfopristin, trimethoprim-sulfamethoxazole, mupirocin, vancomycin, teicoplanin, linezolid, tigecycline |
mecA, mecC, SCCmec, pvl, tsst-1, eta, etb, agr type, spa type |
Enterococci |
Blood |
Ampicillin, penicillin, ciprofloxacin, gentamicin, streptomycin, tetracycline, Vancomycin, teicoplanin, linezolid, tigecycline |
vanA, vanB, vanM
|
S. pneumoniae
|
Blood |
Penicillin, amoxacillin-clavulanate, cefotaxime, ceftriaxone, cefuroxime, erythromycin, levofloxacin, trimethoprim-sulfamethoxazole |
vanA, vanB, vanM
|
E. coli
|
Blood, urine |
Ampicillin, piperacillin, ampicillin-sulbactam, cefazolin, cefotaxime, ceftazidime, cefepime, aztreonam, cefoxitin, imipenem, meropenem, ertapenem, amikacin, gentamicin, ciprofloxacin, trimethoprim-sulfamethoxazole, tigecycline, colistin |
blaTEM, blaSHV, blaCTX-M, blaCMY, blaDHA, blaACC, blaACT-1, blaFOX, blaKPC, blaGES, blaNDM-1, blaIMP, blaVIM, blaOXA-48, mcr-1, mcr-2
|
K. pneumoniae
|
Blood, urine |
Piperacillin, ampicillin-sulbactam, cefazolin, cefotaxime, ceftazidime, cefepime, aztreonam, cefoxitin, imipenem, meropenem, ertapenem, amikacin, gentamicin, ciprofloxacin, trimethoprim-sulfamethoxazole, tigecycline, colistin |
blaTEM, blaSHV, blaCTX-M, blaCMY, blaDHA, blaACC, blaACT-1, blaFOX, blaKPC, blaGES, blaNDM-1, blaIMP, blaVIM, blaOXA-48, mcr-1, mcr-2
|
Salmonella spp. |
Blood, feces |
Azithromycin, cefotaxime, ceftazidime, ciprofloxacin, imipenem |
blaCTX-M, gyrA, parC
|
Shigella spp. |
Blood, feces |
Azithromycin, cefotaxime, ceftazidime, ciprofloxacin, imipenem |
blaCTX-M, gyrA, parC
|
P. aeruginosa
|
Blood |
Piperacillin, piperacillin-tazobactam, ceftazidime, cefepime, imipenem, meropenem, amikacin, gentamicin, tobramycin, ciprofloxacin, colistin |
blaKPC, blaGES, blaNDM, blaIMP, blaVIM, blaOXA-48
|
Acinetobacter spp. |
Blood |
Piperacillin, ampicillin-sulbactam, ceftazidime, cefepime, imipenem, meropenem, amikacin, gentamicin, tobramycin, ciprofloxacin, minocycline, tigecycline, colistin |
blaOXA-51, blaOXA-23, blaOXA-24, blaOXA-58, ISAba-1, blaKPC, blaGES, blaNDM, blaIMP, blaVIM, blaOXA-48
|
N. gonorrhoeae
|
Urogenital |
Azithromycin, cefixime, cefpodoxime, ceftriaxone, ciprofloxacin, gentamicin, nalidixic acid, penicillin G, spectinomycin, tetracycline |
23S rRNA, 16S rRNA, erm(B), erm(C), erm(F), mef, penA, mtrR, porB, ponA, pilQ, rpsE
|
C. difficile
|
Feces |
Ampicillin, cefotetan, clindamycin, imipenem, chloramphenicol, tetracycline, moxifloxacin, metronidazole, vancomycin, rifaximin |
erm(B), catD, tet(M), gyrA, gyrB, rpoB, tcdA, tcdB, cdtA, cdtB, ribotype (16S-23S rRNA) |
Candida spp. |
Blood |
Fluconazole, voriconazole, amphotericin B, micafungin, anidulafungin, caspofungin, Posaconazole, flucytosine |
ITS, 26S rRNA D1/D2, ERG11, PDR1, FKS
|