Abstract
Background
The differentiation of Mycobacterium tuberculosis (MTB) from nontuberculous mycobacteria (NTM) is of primary importance for infection control and choice of antimicrobial therapy. The diagnosis of diseases caused by NTM is difficult because NTM are prevalent in the environment and have fastidious properties. In this study, we evaluated the realtime PCR-based MTB/NTM detection kit for its usefulness in discrimination of MTB and NTM species.
Methods
A total of 155 sputum specimens whose AFB staining smear and culture were positive were used for this study. Among them, 59 and 96 samples had been identified as MTB and NTM, respectively. DNA obtained from sputum specimens was subjected to analysis with MolecuTech Real MTB-IDⓇ (M&D, Korea) realtime PCR-based MTB/NTM detection kit. Subsequently, the results of MolecuTech Real MTB-IDⓇ were compared with AFB staining smear and culture results.
REFERENCES
1. World Health Organization. Global Tuberculosis Control. Surveillance, Planning, Financing. WHO Report 2004. Geneva: World Health Organization;2004.
2. Chang HE, Heo SR, Yoo KC, Song SH, Kim SH, Kim HB, et al. Detection of Mycobacterium tuberculosis complex using realtime polymerase chain reaction. Korean J Lab Med. 2008; 28:103–8.
3. Wright PW, Wallace RJ Jr, Wright NW, Brown BA, Griffith DE. Sensitivity of fluorochrome microscopy for detection of Mycobacterium tuberculosis versus nontuberculous mycobacteria. J Clin Microbiol. 1998; 36:1046–9.
4. Management of opportunist mycobacterial infections: Joint Tuberculosis Committee Guidelines 1999. Subcommittee of the Joint Tuberculosis Committee of the British Thoracic Society.
5. Koh WJ, Kwon OJ, Yu CM, Jeon KM, Suh GY, Chung MP, et al. Recovery rate of non-tuberculous mycobacteria from acid-fast bacilli smear-positive sputum specimens. Tuberc Respir Dis. 2003; 54:22–32.
6. Koh WJ, Kwon OJ, Lee KS. Diagnosis and treatment of nontuberculous mycobacterial pulmonary diseases: a Korean perspective. J Korean Med Sci. 2005; 20:913–25.
7. Yeam YS, Jeong OY, Jang SJ, Moon DS, Park YJ. Comparison of culture, Acid-Fast stain and polymerase chain reaction assay for detection of mycobacterium tuberculosis. Korean J Clin Pathol. 1995; 15:594–603.
8. Yang HY, Lee HJ, Park SY, Lee KK, Suh JT. Comparison of in-house polymerase chain reaction assay with conventional techniques for the detection of Mycobacterium tuberculosis. Korean J Lab Med. 2006; 26:174–8.
9. Chakravorty S and Tyagi JS. Novel multipurpose methodology for detection of Mycobacteria in pulmonary and extrapulmonary specimens by smear microscopy, culture, and PCR. J Clin Microbiol. 2005; 43:2697–702.
10. Kim YJ, Park MY, Kim SY, Cho SA, Hwang SH, Kim HH, et al. Evaluation of the performances of AdvanSure TB/NTM real time PCR kit for detection of mycobacteria in respiratory specimens.
11. Jung CL, Kim MK, Seo DC, Lee MA. Clinical usefulness of realtime PCR and amplicor MTB PCR assays for diagnosis of tuberculosis. Korean J Clin Microbiol. 2008; 11:29–33.
12. Broccolo F, Scarpellini P, Locatelli G, Zingale A, Brambilla AM, Cichero P, et al. Rapid diagnosis of mycobacterial infections and quantitation of Mycobacterium tuberculosis load by two realtime calibrated PCR assays. J Clin Microbiol. 2003; 41:4565–72.
13. Bruijnesteijn Van Coppenraet ES, Lindeboom JA, Prins JM, Peeters MF, Claas EC, Kuijper EJ. Real-time PCR assay using fine-needle aspirates and tissue biopsy specimens for rapid diagnosis of mycobacterial lymphadenitis in children. J Clin Microbiol. 2004; 42:2644–50.
14. Mäkinen J, Marjamäki M, Marttila H, Soini H. Evaluation of a novel strip test, GenoType Mycobacterium CM/AS, for species identification of mycobacterial cultures. Clin Microbiol Infect. 2006; 12:481–3.
15. Padilla E, González V, Manterola JM, Pérez A, Quesada MD, Gordillo S, et al. Comparative evaluation of the new version of the INNO-LiPA Mycobacteria and genotype Mycobacterium assays for identification of Mycobacterium species from MB/BacT liquid cultures artificially inoculated with Mycobacterial strains. J Clin Microbiol. 2004; 42:3083–8.
16. Sanguinetti M, Posteraro B, Ardito F, Zanetti S, Cingolani A, Sechi L, et al. Routine use of PCR-reverse cross-blot hybridization assay for rapid identification of Mycobacterium species growing in liquid media. J Clin Microbiol. 1998; 36:1530–3.
17. Park H, Jang H, Song E, Chang CL, Lee M, Jeong S, et al. Detection and genotyping of Mycobacterium species from clinical isolates and specimens by oligonucleotide array. J Clin Microbiol. 2005; 43:1782–8.
18. Park CM, Heo SR, Park KU, Song J, Lee JH, Lee CT, et al. Isolation of nontuberculous mycobacteria using polymerase chain reaction-restriction fragment length polymorphism. Korean J Lab Med. 2006; 26:161–7.
19. Lee CK, Kim CH, Ma KR, Kim YK, Lee KN, Cheong HJ, et al. Comparison of in-house polymerase chain reaction and Amplicor MTB for diagnosis of tuberculosis in the respiratory specimens. J Korean Soc Chemother. 1998; 16:97–103.
20. Kim SY, Park YJ, Kang SJ, Kim BK, Kang CS. Comparison of the BDProbeTec ET system with the roche COBAS AMPLICOR System for detection of Mycobacterium tuberculosis complex in the respiratory and pleural fluid specimens. Diagn Microbiol Infect Dis. 2004; 49:13–8.
21. Ho TB, Robertson BD, Taylor GM, Shaw RJ, Young DB. Comparison of Mycobacterium tuberculosis genomes reveals frequent deletions in a 20 kb variable region in clinical isolates. Yeast. 2000; 17:272–82.
22. Talarico S, Durmaz R, Yang Z. Insertion- and deletion-associated genetic diversity of Mycobacterium tuberculosis phospholipase C-encoding genes among 106 clinical isolates from Turkey. J Clin Microbiol. 2005; 43:533–8.
23. Gordon SV, Brosch R, Billault A, Garnier T, Eiglmeier K, Cole ST. Identification of variable regions in the genomes of tubercle bacilli using bacterial artificial chromosome arrays. Mol Microbiol. 1999; 32:643–55.
24. Lee H, Park HJ, Cho SN, Bai GH, Kim SJ. Species identification of mycobacteria by PCR-restriction fragment length polymorphism of the rpoB gene. J Clin Microbiol. 2000; 38:2966–71.
Table 1.
AFB smear | Culture confirmation results | Total number of sputum specimens | |
---|---|---|---|
MTB | NTM | ||
Trace | 3 | 5 | 8 |
+1 | 22 | 24 | 46 |
+2 | 12 | 32 | 44 |
+3 | 6 | 15 | 21 |
+4 | 13 | 20 | 36 |
Total | 59 | 96 | 155 |