Journal List > J Bacteriol Virol > v.45(1) > 1034194

Ahn, Lee, and Lee: Prediction of Nuclear Targeting Proteins with Nuclear Localization Signals in Staphylococcus aureus and Nuclear Targeting of β-lactamase in Host Cells

Abstract

Nuclear targeting of bacterial proteins in host cells and subsequent interaction with nuclear molecules are an emerging pathogenic mechanism of bacteria. In this study, we predicted the nuclear targeting proteins with nuclear localization signals (NLSs) in Staphylococcus aureus using bioinformatic analysis. A total of 51 proteins of S. aureus, comprising of 24 functional and 27 hypothetical proteins, were predicted to carry putative NLSs. Among them, β-lactamase and MsrR proteins with the putative NLSs were selected to determine the nuclear targeting in host cells. Fusion proteins of BlaZ-green fluorescent protein (GFP) were evenly distributed in the nuclei of host cells and subsequently induced host cell death. However, fusion proteins of MsrR-GFP were not localized in the nuclei of host cells In conclusion, screening of nuclear targeting proteins with NLSs and determination of their pathology in host cells may open up the new field of S. aureus pathogenesis.

REFERENCES

1). Matarrese P, Falzano L, Fabbri A, Gambardella L, Frank C, Geny B, et al. Clostridium difficile toxin B causes apoptosis in epithelial cells by thrilling mitochondria. Involvement of ATP-sensitive mitochondrial potassium channels. J Biol Chem. 2007; 282:9029–41.
2). Müller A, Günther D, Brinkmann V, Hurwitz R, Meyer TF, Rudel T. Targeting of the pro-apoptotic VDAC-like porin (PorB) of Neisseria gonorrhoeae to mitochondria of infected cells. EMBO J. 2000; 19:5332–43.
3). Nagai T, Abe A, Sasakawa C. Targeting of enteropathogenic Escherichia coli EspF to host mitochondria is essential for bacterial pathogenesis: critical role of the 16th leucine residue in EspF. J Biol Chem. 2005; 280:2998–3011.
4). Nougayrède JP, Donnenberg MS. Enteropathogenic Escherichia coli EspF is targeted to mitochondria and is required to initiate the mitochondrial death pathway. Cell Microbiol. 2004; 6:1097–111.
5). Papatheodorou P, Domańska G, Oxle M, Mathieu J, Selchow O, Kenny B, et al. The enteropathogenic Escherichia coli (EPEC) Map effector is imported into the mitochondrial matrix by the TOM/Hsp70 system and alters organelle morphology. Cell Microbiol. 2006; 8:677–89.
6). Cokol M, Nair R, Rost B. Finding nuclear localization signals. EMBO Rep. 2000; 1:411–5.
crossref
7). Elwell C, Chao K, Patel K, Dreyfus L. Escherichia coli CdtB mediates cytolethal distending toxin cell cycle arrest. Infect Immun. 2001; 69:3418–22.
8). Toyotome T, Suzuki T, Kuwae A, Nonaka T, Fukuda H, Imajoh-Ohmi S, et al. Shigella protein IpaH (9.8) is secreted from bacteria within mammalian cells and transported to the nucleus. J Biol Chem. 2001; 276:32071–9.
9). Haraga A, Miller SI. A Salmonella enterica serovar Typhimurium translocated leucine-rich repeat effector protein inhibits NF-κB-dependent gene expression. Infect Immun. 2003; 71:4052–8.
10). Benabdillah R, Mota LJ, Lützelschwab S, Demoinet E, Cornelis GR. Identification of a nuclear targeting signal in YopM from Yersinia spp. Microb Pathog. 2004; 36:247–61.
11). Choi CH, Hyun SH, Lee JY, Lee JS, Lee YS, Kim SA, et al. Acinetobacter baumannii outer membrane protein A targets the nucleus and induces cytotoxicity. Cell Microbiol. 2008; 10:309–19.
12). Lee JC, Kim DS, Moon DC, Lee JH, Kim MJ, Lee SM, et al. Prediction of bacterial proteins carrying a nuclear localization signal and nuclear targeting of HsdM from Klebsiella pneumoniae. J Microbiol. 2009; 47:641–5.
13). Lara-Tejero M, Galán JE. A bacterial toxin that controls cell cycle progression as a deoxyribonuclease I-like protein. Science. 2000; 290:354–7.
crossref
14). McSweeney LA, Dreyfus LA. Nuclear localization of the Escherichia coli cytolethal distending toxin CdtB subunit. Cell Microbiol. 2004; 6:447–58.
15). Nishikubo S, Ohara M, Ueno Y, Ikura M, Kurihara H, Komatsuzawa H, et al. An N-terminal segment of the active component of the bacterial genotoxin cytolethal distending toxin B (CDTB) directs CDTB into the nucleus. J Biol Chem. 2003; 278:50671–81.
crossref
16). Choi CH, Hyun SH, Kim J, Lee YC, Seol SY, Cho DT, et al. Nuclear translocation and DNAse I-like enzymatic activity of Acinetobacter baumannii outer membrane protein A. FEMS Microbiol Lett. 2008; 288:62–7.
17). Choi CH, Lee EY, Lee YC, Park TI, Kim HJ, Hyun SH, et al. Outer membrane protein 38 of Acinetobacter baumannii localizes to the mitochondria and induces apoptosis of epithelial cells. Cell Microbiol. 2005; 7:1127–38.
18). Izaurralde E, Adam S. Transport of macromolecules between the nucleus and the cytoplasm. RNA. 1998; 4:351–64.
19). Moroianu J. Distinct nuclear import and export pathways mediated by members of the karyopherin β family. J Cell Biochem. 1998; 70:231–9.
crossref
20). Mosammaparast N, Pemberton LF. Karyopherins: from nuclear-transport mediators to nuclear-function regulators. Trends Cell Biol. 2004; 14:547–56.
crossref
21). Pemberton LF, Blobel G, Rosenblum JS. Transport routes through the nuclear pore complex. Curr Opin Cell Biol. 1998; 10:392–9.
crossref
22). Moon DC, Gurung M, Lee JH, Lee YS, Choi CW, Kim SI, et al. Screening of nuclear targeting proteins in Acinetobacter baumannii based on nuclear localization signals. Res Microbiol. 2012; 163:279–85.
23). Lee JH, Jun SH, Baik SC, Kim DR, Park JY, Lee YS, et al. Prediction and screening of nuclear targeting proteins with nuclear localization signals in Helicobacter pylori. J Microbiol Methods. 2012; 91:490–6.
24). Sambrook J, Fritsch E, Maniatis T. Molecular Cloning: A Laboratory Manual. Cold Spring Harbour, New York: Cold Spring Harbour Press;1989.
25). Gurung M, Moon DC, Choi CW, Lee JH, Bae YC, Kim J, et al. Staphylococcus aureus produces membrane-derived vesicles that induce host cell death. PLoS One. 2011; 6:e27958.
26). Lee EY, Choi DY, Kim DK, Kim JW, Park JO, Kim S, et al. Gram-positive bacteria produce membrane vesicles: proteomics-based characterization of Staphylococcus aureus-derived membrane vesicles. Proteomics. 2009; 9:5425–36.
27). Lee J, Lee EY, Kim SH, Kim DK, Park KS, Kim KP, et al. Staphylococcus aureus extracellular vesicles carry biologically active β-lactamase. Antimicrob Agents Chemother. 2013; 57:2589–95.
28). Lee JC. Staphylococcus aureus membrane vesicles and its potential role in bacterial pathogenesis. J Bacteriol Virol. 2012; 42:181–8.

Figure 1.
Nuclear targeting of fusion proteins of BlaZ-GFP in host cells. COS-7 and HEp-2 cells were transfected with blaZ and msrR cloned with pAcGFP1-N2 vector, respectively. Cells were transfected with the empty pAcGFP1-N2 vector as a control. Expression of BlaZ-GFP fusion proteins in host cells was observed using fluorescence microscope. Magnification: ×40.
jbv-45-36f1.tif
Figure 2.
Cytosolic localization of fusion proteins of GFP-BlaZ in host cells. COS-7 cells were transfected with pAcGFP1-C2 vector or blaZ cloned with pAcGFP1-C2 vector. Expression of GFP-BlaZ fusion proteins in host cells was observed using fluorescence microscope. Magnification: ×40.
jbv-45-36f2.tif
Figure 3.
Cytotoxicity of β-lactamase fused with GFP in host cells. Cells were transfected with plasmid constructs of blaZ cloned with pAcGFP1-C2 and pAcGFP1-N2 vector, respectively. Cells were transfected with pAcGFP1-N2 or pAcGFP1-C2 vectors as a control. Cells transfected cells with plasmid constructs were incubated at 37°C for 44 h, and MTT assay was performed. (A), COS-7 cells. (B), HEp-2 cells. Data are presented as the mean ± SD of duplicate experiments. *p < 0.05.
jbv-45-36f3.tif
Table 1.
Prediction of NLS sequences in functional proteins of S. aureus
GenBank Accession No. Protein (No. of amino acid) Putative NLS sequences
C90022 50S ribosomal protein L23 (91) 72NKRRK76
A89954 Acetyl-CoA carboxylase transferase (285) 9KKKKYL13
AAA26683.1 Acetyltransferase (219) 208LKRKRKL214
C90070 Alkaline phosphatase III precursor (474) 393KKLQKLLKK401
AAN71837.1 BacG-like protein (331) 2RKKKL6
AY369345 Beta-lactamase (179) 136KKIKKRLKK144
AAL00934.1 Cell surface elastin binding protein (486) 53QRRKRRR59
D89918 Dihydrolipoamide succinyltransferase (422) 231RKRKKE236
BAA01369.1 DNA gyrase B (644) 108GGKFGGGG115
A89927 Elastin binding protein (486) 53QRRKRRR59
BAD72834.1 Enoyl-ACP reductase (243) 31RKERSRKE38
NP_932197.1 Far1 (213) 98KKVKKIKIP106
B90054 Gluconate permease (452) 293MRKRKM298
BAA24009.1 Integrase (354) 120KIPKRRK126
AAQ55244.1 MobA (330) 252RREKIKRD259
Q7BHL7 Regulatory protein MsrR (327) 21KRKKKKK27
AAF24086.1 Resolvase (205) 121RKKIKER127
CAD91929.1 Ribonuclease R (790) 747GRKKKGKQ754
F89870 Serine proteinase HtrA (769) 15RKRRE19
AAL58470.1 Serine-threonine rich antigen (2283) 2268RKKKKD2273
AAQ17171.1 Tn552 transposase (480) 14KRKKAIQKY22
AAQ17141.1 TraK (546) 452KRKKNQ457
AAF05840.1 Trans-2-enoyl-ACP reductase (256) 39RKERSRKE46
P26839 Virginiamycin A acetyltransferase (219) 208LKRKRKL214
Table 2.
Prediction of NLS sequences in hypothetical proteins of S. aureus
GenBank Accession No. Protein (No. of amino acid) Putative NLS sequences
AAF24090.1 AF117259_2 unknown (190) 175LKRKRMKL182
AAF81096.1 Putative undecaprenol kinase (291) 90QRRSKPRR97
B89867 Hypothetical protein appF (326) 83KKLRKSRQ90
QQSA4E Hypothetical protein C-403 (403) 292KKRRESLKE300
B89921 Hypothetical protein ebhA (6713) 6612PKRRRKE6618
YP_025317.1 Hypothetical protein pE194p1 (403) 292KKRRESLKE300
YP_025317.1 Hypothetical protein SA0297 (225) 181LRDQAKKRK189
H89799 Hypothetical protein SA0331 (284) 220KKDKKL225
F89801 Hypothetical protein SA0345 (613) 456KKRTH460
C89817 Hypothetical protein SA0464 (87) 10RLIKRR15
D89817 Hypothetical protein SA0465 (130) 18KKQRQKM24
C89828 Hypothetical protein SA0550 (113) 90RKRRKE95
D89828 Hypothetical protein SA0551 (482) 32LKTFKRR38
E89856 Hypothetical protein SA0769 (341) 112PRRRAKQ118
D89880 Hypothetical protein SA0954 (339) 281KKKEKRK287
C89893 Hypothetical protein SA1051 (565) 436KKKKA440
B89902 Hypothetical protein SA1122 (428) 332DKLKKL337
D89922 Hypothetical protein SA1277 (381) 352KRRKL356
E89946 Hypothetical protein SA1464 (86) 22PQQKRAKQ29
A89959 Hypothetical protein SA1562 (1274) 21KKKRR25
F89960 Hypothetical protein SA1575 (553) 543KLRRRVR549
D89968 Hypothetical protein SA1639 (262) 80KKRKK84
A89988 Hypothetical protein SA1788 (123) 79RKRKREAELRRKKP92
B90038 Hypothetical protein SA2165 (207) 4RRIRKTK10
E90065 Hypothetical protein SA2382 (188) 137KKGDNKLIKK146
F90073 Hypothetical protein SA2447 (2271) 2256RKKKKD2261
BAB96506.1 Truncated probable transposase (222) 14KRKKATQK21
TOOLS
Similar articles