Journal List > J Bacteriol Virol > v.40(3) > 1033963

Kim, Lee, Cho, Song, Song, Kang, Lee, Cho, Rhee, and Baik: Identification of Helicobacter pylori Strain 51 Major Outer Membrane Proteins by Quadrupole Time of Flight Mass Spectrometry

Abstract

As part of an initial inquiry into the function of the outer membrane proteins (OMPs) of Helicobacter pylori Korean strain 51, we have conducted an extensive proteome analysis via quadrupole time of flight (Q-TOF) mass spectrometry (MS). Fifty one OMPs of H. pylori were purified using sarcosine and resolved via two-dimensional electrophoresis with immobilized pH gradient strips. The most abundant proteins were observed in the alkaline pI regions (6.0~11.0) at molecular masses between 10~100 KDa. Here, 15 spots were identified, representing 9 types of genes (KHP0852, KHP0853, KHP1353, KHP1017, KHP0172, KHP0076, KHP0617, KHP1069, KHP0614) from the sarcosin-insoluble fraction of H. pylori 51. These may be employed in the characterization of the OMPs of H. pylori 51, which will help to identify new potential target proteins for vaccine development and drug therapy.

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Figure 1.
H. pylori strain 51 outer membrane protein 2-DE map. The sarcosyl-insoluble proteins were separated on an IPG strip and detected via silver staining. The proteins of the circled spots were identified by Q-TOF.
jbv-40-103f1.tif
Table 1.
Identification of H. pylori 51 OMPs by amino acid sequence analysis
Spot no Protein name Mass (KDa) pI Amino acid sequence KHP NO.
1 Outer rmembrane protein (OMP21) 57,027 9.8 FQFLFDVGLR KHP0853
2 Outer membrane protein (OMP21) 57,027 9.8 STQLLNNTTNTLAK KHP0853
3 Outer membrane protein (OMP20) 55,897 9.4 QDELLLEAFNSAVAANI KHP0852
4 Outer membrane protein (OMP21) 57,027 9.8 STQLLNNTTNTLAK KHP0853
5 Outer membrane protein (OMP21) 57,027 9.8 FQFLFDVGLR KHP0853
6 Outer membrane protein (OMP32) 42,948 9.8 IPTLPNYFFK KHP1353
7 Gamma-glutamyltranspeptidase(GGT) 61,113 10.1 VGLALSSHPLASEIGQK KHP1017
8 Gamma-glutamyltranspeptidase(GGT) 61,113 10.1 GFYQGQVAELT KHP1017
9 Cell binding factor 2 34,010 10.1 AAFALTPGDYTK KHP0172
10 Urease protein Ure A 26,613 9.0 SVELIDIGGNR KHP0076
11 Urease protein Ure A 26,655 8.43 IFGFNALVDR KHP0076
12 Outer membrane protein 30,157 9.47 YLGTNYQLGQA KHP0617
13 Hypothetical protein HP1173 20,747 9.46 ISLVGNFDGTGFLTEYK KHP1069
14 Hypothetical protein HP1173 20,747 9.46 ISLVGNFDGTGFLTEYK KHP1069
15 Hypothetical protein 32,818 10 GVAFSVDSNLK KHP0614
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