Association of the Single-Nucleotide Polymorphism and Haplotype of the Complement Receptor 1 Gene with Malaria

Yan Lan; Chuan-Dong Wei; Wen-Cheng Chen; Jun-Li Wang; Chun-Fang Wang; Guo-Gang Pan; Ye-Sheng Wei; Le-Gen Nong

doi:10.3349/ymj.2015.56.2.332

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Lan, Wei, Chen, Wang, Wang, Pan, Wei, and Nong: Association of the Single-Nucleotide Polymorphism and Haplotype of the Complement Receptor 1 Gene with Malaria

Original Article

Infectious Diseases

Yonsei Medical Journal 2015; 56(2): 332-339.

Published online: 9 February 2015

DOI: https://doi.org/10.3349/ymj.2015.56.2.332

Association of the Single-Nucleotide Polymorphism and Haplotype of the Complement Receptor 1 Gene with Malaria

Yan Lan^1,^*, Chuan-Dong Wei^2,^*, Wen-Cheng Chen^2,^*, Jun-Li Wang², Chun-Fang Wang², Guo-Gang Pan², Ye-Sheng Wei², Le-Gen Nong³

¹Department of Dermatology, Affiliated Hospital of Youjiang Medical University for Nationalities, Baise, Guangxi, P. R. China.

²Department of Laboratory Medicine, Affiliated Hospital of Youjiang Medical University for Nationalities, Baise, Guangxi, P. R. China.

³Institute of Medical Laboratory, Youjiang Medical University for Nationalities, Baise, Guangxi, P. R. China.

Corresponding author: Dr. Le-Gen Nong, Institute of Medical Laboratory, Youjiang Medical University for Nationalities, No. 98 Chengxiang Road, Baise, Guangxi 533000, P. R. China. Tel: 86-776-2829008, Fax: 86-776-2829008, yyfynlg@163.com

Corresponding author: Dr. Ye-Sheng Wei, Department of Laboratory Medicine, Affiliated Hospital of Youjiang Medical University for Nationalities, No. 18 Zhongshan Road, Baise, Guangxi 533000, P. R. China. Tel: 86-776-2853093, Fax: 86-776-2853093, wysh22@163.com

Equal contributor:

*Yan Lan, Chuan-Dong Wei, and Wen-Cheng Chen equally contributed to this work.

Received 3 December 2013 Revised 27 March 2014 Accepted 23 April 2014

(open-access):

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Abstract

Purpose

Although the polymorphisms of erythrocyte complement receptor type 1 (CR1) in patients with malaria have been extensively studied, a question of whether the polymorphisms of CR1 are associated with severe malaria remains controversial. Furthermore, no study has examined the association of CR1 polymorphisms with malaria in Chinese population. Therefore, we investigated the relationship of CR1 gene polymorphism and malaria in Chinese population.

Materials and Methods

We analyzed polymorphisms of CR1 gene rs2274567 G/A, rs4844600 G/A, and rs2296160 C/T in 509 patients with malaria and 503 controls, using the Taqman genotyping assay and PCR-direct sequencing.

Results

There were no significant differences in the genotype, allele and haplotype frequencies of CR1 gene rs2274567 G/A, rs4844600 G/A, and rs2296160 C/T polymorphisms between patients with malaria and controls. Furthermore, there was no association of polymorphisms in the CR1 gene with the severity of malaria in Chinese population.

Conclusion

These findings suggest that CR1 gene rs2274567 G/A, rs4844600 G/A, and rs2296160 C/T polymorphisms may not be involved in susceptibility to malaria in Chinese population.

Keywords: Erythrocyte complement receptor type 1, gene, polymorphism, haplotype, malaria

INTRODUCTION

The global malaria is still very serious in currently. From the World Health Organization (WHO) report in 2008 indicated that an estimated 247 million malaria cases and about 3.3 billion people at risk.1 The manifestations of malaria range from asymptomatic parasitaemia in semi-immune individuals to severe disease in susceptible populations, including the children under the age of five years, pregnant women, and non-immune adults. Among the infected patients, the symptoms of severe malaria have shown on different forms, including severe anaemia, cerebral malaria, placental malaria, metabolic acidosis, and hypoglycaemia, and so on.2,3 Although there were variety of causes to cause those disease patterns, but recent researches have shown that lack of erythrocyte complement regulatory proteins was the main in pathogenesis of severe malaria anaemia, those complement regulatory proteins including complement receptor 1 and CD55 (CR1/CD35).4,5 Those complement regulatory proteins can inhibit formation of C3 convertases, and prevent terminal polymerization of membrane attack complex, thus protecting the destruction of red blood cells.6

CR1 is an immune-regulatory protein found on the surface of erythrocytes and most leukocytes, and its functions include key complement regulation of complement activation and clearance of immune complexes.7,8 Furthermore, increasing evidences from several studies suggest that CR1 plays a critical role in the pathogenesis of Plasmodium falciparum (P. falciparum) malaria.9,10 Early study found that the surface of erythrocytes of CR1 can bind the infected red cells to uninfected red cells to form rosettes, which is thought to contribute to malaria pathology by causing microvascular obstruction and impaired tissue perfusion.11 Recently, studies indicated also that CR1 is a receptor for the invasion of erythrocytes by P. falciparum,12 and some studies suggest that CR1 not only regulate the complement system but also clear the immune complexes during malaria infection.13,14 Thus, the correlation of CR1 receptor and malaria remains to be studied.11

The gene encoding CR1 is located at long arm of chromosome 1 in humans. Recent data showed that CR1 gene polymorphisms influence CR1 production or protein expression and are associated with malaria in several populations.15,16,17 Furthermore, clinical studies showed a correlation between the levels of serum CR1 and disease severity in patients with malaria.18,19 On the other hand, some results were inconsistent.20,21 Moreover, the CR1 expression level in the populations from Papua New Guinea (PNG), Mali, and the United Kingdom has recently been shown to be not associated with polymorphisms in the 3' untranslated regions of the CR1 gene.22 Although, little is known about the role of single nucleotide polymorphisms (SNPs) of CR1 gene in the development of malaria, National Center for Biotechnology Information SNP database showed that CR1 gene rs2274567 G/A, rs4844600 G/A, and rs2296160 C/T sites (all are located on coding region) have frequencies of polymorphism distribution in different ethnicity, including Chinese. Lastly, research for Thailand population indicated that the CR1 gene rs2274567 G/A and rs2296160 C/T sites polymorphisms are not associated with CR1 level and malaria.23 However, there have been no studies to examine the association between SNPs of CR1 gene rs2274567 G/A, rs4844600 G/A, and rs2296160 C/T with malaria in a Chinese population. In this study, we evaluated whether CR1 gene rs2274567 G/A, rs4844600 G/A, rs2296160 C/T sites polymorphisms and haplotype are associated with malaria in a Chinese population.

MATERIALS AND METHODS

Study population

The case-control population contained 1012 adult unrelated Chinese selected from the same populations living in China between February and August 2012, and the demographics of the cases and controls are shown in Table 1. There were no significant differences between the cases and controls for the mean age or gender distribution, smoking and alcohol consumption status, suggesting that the matching based on these two variables was adequate. For all patients with malaria, malarial infection with P. falciparum was confirmed by a positive blood smear result for the asexual form of P. falciparum. Clinical manifestations of malaria were classified according to the definitions and associated criteria set forth by the WHO. The patients were selected from groups with 3 different types of malaria (i.e., mild malaria, noncerebral severe malaria, and cerebral malaria). The mild malaria group consisted of 327 patients with mild symptoms who were characterized by fever without other causes of infection but by none of the manifestations of severe malaria described below. The noncerebral severe malaria group (hereafter referred to the "severe malaria group") comprised 102 patients with severe malaria, which was defined as malaria with evidence of vital organ dysfunction or with one of the following signs of severity: a high level of parasitemia (>100000 parasites/mL), hypoglycemia (plasma glucose level <22 nmol/L), severe anemia (a hematocrit of <20% or a hemoglobin level <7 g/dL), or a serum creatinine level >3 mg/dL. The cerebral malaria group consisted of 80 patients who experienced a coma from which they could not be roused and for whom noncerebral causes of coma could be excluded. All of the patients in this group were ≥9 years of age, and mean ages of patients with mild malaria, severe malaria, and cerebral malaria were 43.1±12.3, 40.2±9.8, and 43.7±14.2 years, respectively. The control group comprised 503 healthy volunteers selected on the basis of no evidence of any personal or family history of malaria or other serious illness. The mean age of the control group (247 males and 256 females) was 43.1±13.5 years. Written informed consent was obtained from all the subjects, and the study was performed with the approval of the ethics committee of Chinese Human Genome.

DNA extraction

Genomic DNA was extracted from ethylenediaminetetraacetic acid-anticoagulated peripheral blood leukocytes by the salting-out method.24 Briefly, 3 mL of blood was mixed with Triton lysis buffer (0.32 M sucrose, 1% Triton X 100, 5 mM MgCl₂, H₂O, 10 mM Tris-HCl, pH 7.5). Leucocytes were spun down and washed with H₂O. The pellet was incubated with proteinase K at 56℃ and subsequently salted out at 4℃ using a saturated NaCl solution. Precipitated proteins were removed by centrifugation. The DNA in the supernatant fluid was dissolved in 300 µL of H₂O.

Determination of CR1 genotype

The oligonucleotide forward primer 5'-AGC AAA ACT TTC ATA AAA CTT ACC AAC-3' and reverse primer 5'-CGC AGA AGG TAA AAT GAG AGT ATG T-3' were used to amplify a fragment, which included CR1 gene rs2296160 site, by polymerase chain reaction (PCR). Similarly, using PCR, forward primer 5'-GCT CCC TGA CAG TCC CTC CT-3' and revere primer 5'-CAG CAT AGA CAT AGA GCA CGA GG-3' were used for a fragment which included CR1 gene rs2274567 site, and forward primer 5'-AGC AAA ACT TTC ATA AAA CTT ACC AAC-3' and revere primer 5'-CGC AGA AGG TAA AAT GAG AGT ATG T-3' were used for a fragment which included CR1 gene rs4844600. All three sites of CR1 gene production by PCR were used for DNA sequencing. The genotyping was performed on an ABI 7900 real-time PCR by Taqman allele discrimination method (Taqman assay; Applied Biosystems, Shanghai, China) using the manufacturers specifications. The Taqman genotyping assay was supplied by Applied Biosystems. The genotypings were confirmed by PCR-direct sequencing using sequenator of ABI 3500 (DNA sequencing; Applied Biosystems, Shanghai, China).

Statistical analysis

Genotype and allele frequencies of CR1 were compared between malaria cases and controls using the χ² test and Fisher's exact test when appropriate, and odds ratios and 95% confidence intervals were calculated to assess the relative risk conferred by a particular allele and genotype. Demographic and clinical data between groups were compared by χ² test and by Student's t-test. Hardy-Weinberg equilibrium was tested for with a goodness of fit χ²-test with one degree of freedom to compare the observed genotype frequencies among the subjects with the expected genotype frequencies. The linkage disequilibrium (LD) between the polymorphisms was quantified using the Shi's standardized coefficient D' (|D'|).25 The haplotypes and their frequencies were estimated based on a Bayesian algorithm using the Phase program.26 Statistical significance was assumed at the p<0.05 level. The SPSS statistical software package version 11.5 (SPSS Inc., Chicago, IL, USA) was used for all of the statistical analysis.

RESULTS

Genotype distribution of CR1 polymorphisms

The results of sequencing, including the CR1 gene rs2274567 G/A, rs4844600 G/A, and rs2296160 C/T sites, are shown in Fig. 1. The genotype and allele frequencies of the CR1 gene rs2274567 G/A, rs4844600 G/A, and rs2296160 C/T polymorphisms in the group of patients with malaria and in the control group are shown in Table 2. The genotype distributions of three polymorphisms among the controls and the cases were in Hardy-Weinberg equilibrium. There were no significant differences in the genotype and allele frequencies of the CR1 gene rs2274567 G/A, rs4844600 G/A, and rs2296160 C/T polymorphisms between the two study groups (p>0.05).

Genotype distribution of CR1 polymorphisms in relation to severity indices of malaria

No association was found between CR1 gene rs2274567 G/A, rs4844600 G/A, and rs2296160 C/T polymorphisms and different types of malaria, shown in Table 3. Genotype and allele frequencies of the CR1 gene rs2274567 G/A, rs4844600 G/A, and rs2296160 C/T polymorphisms in mild malaria were not significantly different between cerebral malaria & severe malaria of malaria patients, respectively (p>0.05).

Haplotype analysis of the CR1 gene

Haplotype analyses were performed, and the possible eight haplotype frequencies are shown in Table 4. The rs2274567 G/A polymorphism was in strong LD with the rs4844600 G/A (|D'|=0.865) and rs2296160 C/T (|D'|=0.854), respectively. The rs4844600 G/A and rs2296160 C/T were in strong LD (|D'|=0.871). Major GGC haplotype accounted for 50.2% and 49.4% of these eight haplotypes in both patients and controls, respectively. However, haplotype frequencies of the CR1 gene in malaria patients were not significantly different than that in healthy controls (p>0.05).

DISCUSSION

To our best knowledge, this is the first attempts to evaluate the association between the single-nucleotide polymorphism and haplotype of CR1 gene rs2274567 G/A, rs4844600 G/A, and rs2296160 C/T sites and malaria in a Chinese population, and we failed to observe an association of CR1 genotypes, alleles and haplotypes with malaria or any subtype of malaria in Chinese population. These data suggest that CR1 gene rs2274567 G/A, rs4844600 G/A, and rs2296160 C/T sites polymorphisms may not be an important contributor to malaria in Chinese population.

As a Complete membrane protein, CR1 mainly found on red blood cells, lymphocytes, macrophages, follicular dendritic cells, macrophages, and kidney podocytes, and so on. Some of functions were found on CR1, including to bind to and remove the immune complexes of C4b- and C3b-, and as a complement regulatory protein 1. Recent research indicated that the CR1 could connect the uninfected red blood cells to resetting of P. falciparum-infected red blood cells through banding to P. falciparum erythrocyte membrane protein 1.27 Several studies have shown that in vitro rosette formation was closely related to the severity of malaria, and CR1 gene polymorphism may be to play an important role on susceptibility to severe malaria pathogenesis.28,29 Furthermore, some data have demonstrated that erythrocytes can play a dual role in immune regulation, removing immune complexes. Single nucleotide polymorphisms in the promoter of CR1 gene would reduce the level of erythrocyte complement receptor type 1 (E-CR1) expression, leading to the accumulation of immune complexes. A lower E-CR1 expression causes tissue damage or cell aggregation and this would lead to severe clinical features, including cerebral malaria. On the other hand, it's higher expression of would protect the development of severe symptoms through improving the clearance rate of immune complexes. Nevertheless, several studies showed contradictory results; higher number of copies of E-CR1 increased the rosette formation,30,31,32,33 and increased rosette formation was associated with severe clinical syndrome of malaria infection.34,35,36,37 Research indicated that the genetic polymorphisms in exon 19 (3093G>T), exon 22 (3650A>G), exon 33 (5507C>G), and intron 27 (Hind III A>T) of the CR1 gene were associated with the level of CR1 expression in different populations of malaria patients.38 And study also shown that contains A Hind III, G3093, A3650, and C5507 of haplotype allele (high expression haplotype) could increase the level expression of CR1, and contains T Hind III, T3093, G3650, and G5507 of haplotype allele (low expression haplotype) would decrease the level expression of CR1.38 Population survey of malaria-endemic area indicated that have some conflicting findings on the association of CR1 polymorphism with malaria, on the one hand, with the intermediate CR1 level of heterozygotes (HL) individuals for the CR1 exon 22 polymorphism significantly protected against severe malaria in PNG,15 on the other hand, with the low CR1 level of homozygous (LL) individuals for the CR1 intron 27 were significantly higher in severe malaria.16 Furthermore, study also shown that the CR1 of rs9429942-T was associated with a high level of expression of erythrocyte-CR1 and contributes to protect against cerebral malaria in Thailand.23 However, the intron 27 and exon 33 variants of CR1 gene did not influence the level of erythrocyte-CR1 expression in African population.21 In the present study, we found no apparent relationship of the CR1 gene CR1 gene rs2274567 G/A, rs4844600 G/A, and rs2296160 C/T sites polymorphisms with the risk of malaria. No strict group for server malaria, thus result in underestimate or overestimate the actual level of CR1 might be the reason of the difference of clinical symptoms and CR1 genotype in different studies. Researches indicated that age-related and/or regional differences of malaria endemic area would change CR1 level on RBC.39,40 In addition, non-random sampling, a limited sample size, and the possible selection bias might be influencing the outcome of different researches. In this study, we also cannot exclude the possibility that observed association depends on a gene in LD with the CR1 gene or effect of CR1 expression on other factors.

In summary, we did not find an association between CR1 gene rs2274567 G/A, rs4844600 G/A, and rs2296160 C/T sites polymorphisms and malaria or any subtype severity of malaria in a Chinese population. Nevertheless, further studies are needed to explore the complex interaction between environmental factors and CR1 gene polymorphisms in the risk of malaria, especially in ethnically disparate populations.

Figures and Tables

Fig. 1

PCR-direct sequencing. CR1 gene rs2274567 site genotype GG, GA, and AA (A). CR1 gene rs4844600 site genotype GG, GA, and AA (B). CR1 gene rs2296160 site genotype CC, CT, and TT (C). PCR, polymerase chain reaction; CR1, complement receptor type 1.

Table 1

Clinical Characteristics of the Study Participants

Variable	Malaria patients, n=509 (%)	Controls, n=503 (%)	p value
Age (mean±SD)	42.6±14.1	43.1±13.5	0.624
Sex			0.234
Male	269 (52.8)	247 (72.0)
Female	240 (47.2)	256 (28.0)
Cigarette smoking			0.330
Non-smokers	278 (54.6)	290 (57.7)
Smokers	231 (45.4)	213 (42.3)
Alcohol consumption			0.293
Non-drinkers	205 (40.3)	219 (43.5)
Drinkers	304 (59.7)	284 (56.5)
Malaria severity
Mild malaria	327 (64.2)
Cerebral malaria & severe malaria	182 (35.8)

Table 2

The Genotype and Allele Frequencies of CR1 Polymorphisms in Malaria Patients and Controls

Polymorphisms	Malaria patients, n=509 (%)	Controls, n=503 (%)	χ²	p value
rs2274567 G/A
Genotypes			1.892	0.388
GG	122 (24.0)	111 (22.1)
GA	231 (45.4)	250 (49.7)
AA	156 (30.6)	142 (28.2)
Alleles			0.014	0.907
G	475 (46.7)	472 (46.9)
A	543 (53.3)	534 (53.1)
rs4844600 G/A
Genotypes			1.364	0.506
GG	199 (39.1)	190 (37.8)
GA	226 (44.4)	240 (47.7)
AA	84 (16.5)	73 (14.5)
Alleles			0.024	0.877
G	624 (61.3)	620 (61.6)
A	394 (38.7)	386 (38.4)
rs2296160 C/T
Genotypes			2.703	0.259
CC	239 (47.0)	226 (44.9)
CT	205 (40.3)	225 (44.7)
TT	65 (12.8)	52 (10.3)
Alleles			0.010	0.922
C	683 (67.1)	677 (67.3)
T	335 (32.9)	329 (32.7)

CR1, complement receptor type 1.

Table 3

The Genotype and Allele Frequencies of CR1 Polymorphisms in Relation to Malaria Severity

Item	Malaria patients		χ²	p value
Item	Mild malaria, n=327 (%)	Cerebral malaria and severe malaria, n=182 (%)	χ²	p value
rs2274567 G/A
Genotypes			1.089	0.580
GG	83 (25.4)	39 (21.4)
GA	147 (45.0)	84 (46.2)
AA	97 (29.7)	59 (32.4)
Alleles			1.057	0.304
G	313 (47.9)	162 (44.5)
A	341 (52.1)	202 (55.5)
rs4844600 G/A
Genotypes			0.813	0.666
GG	124 (37.9)	75 (41.2)
GA	146 (44.6)	80 (44.0)
AA	57 (17.4)	27 (14.8)
Alleles			0.853	0.356
G	394 (60.2)	230 (63.2)
A	260 (39.8)	134 (36.8)
rs2296160 C/T
Genotypes			1.436	0.488
CC	160 (48.9)	79 (43.4)
CT	127 (38.8)	78 (42.9)
TT	40 (12.2)	25 (13.7)
Alleles			1.307	0.253
C	447 (68.3)	236 (64.8)
T	207 (31.7)	128 (35.2)

CR1, complement receptor type 1.

Table 4

Haplotype Frequencies of CR1 Gene in the Patients with Malaria and in Controls

CR1 gene (rs2274567/rs4844600/rs2296160) haplotypes	Cases, 2n=1018 (%)	Controls, 2n=1006 (%)	OR (95% CI)	p value
GGC	511 (50.2)	497 (49.4)	1.032 (0.867-1.229)	0.721
AAT	245 (24.1)	231 (23.0)	1.063 (0.866-1.306)	0.558
GGT	83 (8.2)	91 (9.0)	0.893 (0.654-1.218)	0.474
GAC	28 (2.8)	30 (3.0)	0.920 (0.546-1.552)	0.755
GAT	26 (2.6)	21 (2.1)	1.229 (0.687-2.200)	0.486
AGC	28 (2.8)	29 (2.9)	0.953 (0.563-1.614)	0.857
AGT	23 (2.3)	24 (2.4)	0.946 (0.530-1.687)	0.850
AAC	74 (7.3)	83 (8.3)	0.872 (0.629-1.208)	0.409

CR1, complement receptor type 1; OR, odds ratio; CI, confidence interval.

ACKNOWLEDGEMENTS

This study was supported by National Natural Science Foundation (No. 81160212), the Key Project of Guangxi bureau of health, Guangxi, China (No. 200986), and the Open Fund in Medical Laboratory Science Center of Guangxi (kfjj 2011-03).

Notes

The authors have no financial conflicts of interest.

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