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<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.1 20151215//EN" "JATS-journalpublishing1.dtd">
<article xml:lang="KO" article-type="research-article">

<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">Lab Med Online</journal-id>
<journal-id journal-id-type="publisher-id">LMO</journal-id>
<journal-title-group>
<journal-title>Laboratory Medicine Online</journal-title>
</journal-title-group>
<issn pub-type="epub">2093-6338</issn>
<publisher>
<publisher-name>The Korean Society for Laboratory Medicine</publisher-name>
</publisher>
</journal-meta>

<article-meta>
<article-id pub-id-type="doi">10.3343/lmo.2016.6.4.228</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Original Article</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>Changing Guidelines for Clinical Microbiology Laboratories and Their Influences on Workflows Related to Consultations</article-title>
</title-group>

<contrib-group>

<contrib contrib-type="author">
<name>
<surname>Ahn</surname>
<given-names>Sunyoung</given-names>
</name>
<degrees>M.D.</degrees>
<xref ref-type="aff" rid="A1"></xref>
</contrib>

<contrib contrib-type="author">
<name>
<surname>Kim</surname>
<given-names>Hyunsoo</given-names>
</name>
<degrees>M.D.</degrees>
<xref ref-type="aff" rid="A1"></xref>
</contrib>

<contrib contrib-type="author">
<name>
<surname>Sung</surname>
<given-names>Ji Yeon</given-names>
</name>
<degrees>M.D.</degrees>
<xref ref-type="aff" rid="A1"></xref>
</contrib>

<contrib contrib-type="author">
<name>
<surname>Kim</surname>
<given-names>Myung Sook</given-names>
</name>
<degrees>M.T.</degrees>
<xref ref-type="aff" rid="A1"></xref>
</contrib>

<contrib contrib-type="author" corresp="yes">
<name>
<surname>Yong</surname>
<given-names>Dongeun</given-names>
</name>
<degrees>M.D.</degrees>
<xref ref-type="aff" rid="A1"></xref>
</contrib>

<contrib contrib-type="author">
<name>
<surname>Lee</surname>
<given-names>Kyungwon</given-names>
</name>
<degrees>M.D.</degrees>
<xref ref-type="aff" rid="A1"></xref>
</contrib>

</contrib-group>

<aff id="A1">Department of Laboratory Medicine and Research Institute of Bacterial Resistance, Yonsei University College of Medicine, Seoul, Korea.</aff>

<author-notes>
<corresp>
Corresponding author: Dongeun Yong. Department of Laboratory Medicine and Research Institute of Bacterial Resistance, Yonsei University College of Medicine, 50-1 Yonsei-ro, Seodaemu-gu, Seoul 03722, Korea. Tel: +82-2-2228-2446, Fax: +82-2-313-0908, <email>deyong@yuhs.ac</email>
</corresp>
</author-notes>

<pub-date pub-type="ppub">
<month>10</month>
<year>2016</year>
</pub-date>
<pub-date pub-type="epub">
<day>01</day>
<month>10</month>
<year>2016</year>
</pub-date>
<volume>6</volume>
<issue>4</issue>
<fpage>228</fpage>
<lpage>232</lpage>

<history>
<date date-type="received">
<day>05</day>
<month>11</month>
<year>2015</year>
</date>
<date date-type="rev-recd">
<day>03</day>
<month>01</month>
<year>2016</year>
</date>
<date date-type="accepted">
<day>08</day>
<month>01</month>
<year>2016</year>
</date>
</history>

<permissions>
<copyright-statement>&#x00A9; 2016, Laboratory Medicine Online</copyright-statement>
<copyright-year>2016</copyright-year>
<license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by-nc/4.0/">
<license-p>This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (<ext-link ext-link-type="uri" xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="http://creativecommons.org/licenses/by-nc/4.0/">http://creativecommons.org/licenses/by-nc/4.0/</ext-link>) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
</license>
</permissions>

<abstract>
<sec>
<title>Background</title>
<p>Since the concept of 'minimal identification of poor quality specimens or microbes with low pathogen potential' has been introduced into the standard operating procedure (SOP) to enhance work efficiency, consultations are requested for further species identification and antimicrobial susceptibility testing. The aim of this study was to evaluate the impact of consultations requests to the clinical microbiology laboratory on its work efficiency.</p>
</sec>
<sec>
<title>Methods</title>
<p>From January 2013 to April 2015, consultation requests to the laboratory in a tertiary-care hospital were collected from electronic medical records. The characteristics of consultations and changes to workflow due to the laboratory SOP amendment were analyzed. Turnaround time of the consultation and specimen culture were evaluated as an indicator of workflow efficiency.</p>
</sec>
<sec>
<title>Results</title>
<p>A total of 971 consultations were evaluated during the study period. The most common purposes for consultations were microbe species identification and antimicrobial susceptibility tests. Among the minimal identification reports, the proportions of consultations were below 5%. The number of consultations had increased substantially. However, the turnaround time of consultation and specimen culture showed declining trends.</p>
</sec>
<sec>
<title>Conclusions</title>
<p>With the introduction of the consultation system, the workload for species identification and antimicrobial susceptibility testing of colonizing microbes could be minimized. This research provides an example of work efficiency management for laboratory procedures based on an SOP amendment.</p>
</sec>
</abstract>

<kwd-group>
<kwd>Microbiology</kwd>
<kwd>Laboratory</kwd>
<kwd>Minimal identification</kwd>
<kwd>Consultation</kwd>
<kwd>Turnaround time</kwd>
</kwd-group>

</article-meta>
</front>

<back>
<fn-group>
<fn fn-type="other">
  <p>This article is available from <ext-link ext-link-type="uri" xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="http://www.labmedonline.org">http://www.labmedonline.org</ext-link></p>
</fn>
</fn-group>

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<floats-group>

<fig position="float" id="F1">
<label>Fig. 1</label>
<caption>
  <title>Statistics of numbers of specimen culture and requested consultations during the study period. (A) Monthly numbers of requests for total culture specimens to the clinical microbiology laboratory for identification and antimicrobial sensitivity testing. (B) Number of consultation requests to the clinical microbiology laboratory for specific identification, initially reported as limited identification.</title>
</caption>
<graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="lmo-6-228-g001"></graphic>
</fig>

<fig position="float" id="F2">
<label>Fig. 2</label>
<caption>
  <title>Changing trends in the ratios of specimens reported as a positive culture result, limited identification, and further request for specific identification.</title>
</caption>
<graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="lmo-6-228-g002"></graphic>
</fig>

<fig position="float" id="F3">
<label>Fig. 3</label>
<caption>
  <title>Trends of turnaround time during the study period. (A) Changing turnaround time of specimen culture requests to the clinical microbiology laboratory. (B) Changing turnaround time of consultation requests to the clinical microbiology laboratory.</title>
</caption>
<graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="lmo-6-228-g003"></graphic>
</fig>

<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption>
  <title>Reasons for consultation requests to the clinical microbiology laboratory</title>
</caption>
<alternatives>
<graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="lmo-6-228-i001"></graphic>
<table frame="hsides" rules="rows">
<col width="18%"/>
<col width="52%"/>
<col width="8%"/>
<col width="12%"/>
<col width="10%"/>
<thead>
<tr>
<th valign="top" align="left" rowspan="1" colspan="2" style="background-color:rgb(219,234,185)">Consultation Topics</th>
<th valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(219,234,185)"></th>
<th valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(219,234,185)">Number</th>
<th valign="top" align="center" rowspan="1" colspan="1" style="background-color:rgb(219,234,185)">%</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left" rowspan="1" colspan="3">Bacterial identification</td>
<td valign="top" align="right" rowspan="1" colspan="1">36</td>
<td valign="top" align="right" rowspan="1" colspan="1">3.7</td>
</tr>
<tr>
<td valign="top" align="left" rowspan="1" colspan="3" style="background-color:rgb(237,237,238)">Antimicrobial sensitivity test</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">325</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">33.5</td>
</tr>
<tr>
<td valign="top" align="left" rowspan="1" colspan="3">Both bacterial identification and antimicrobial sensitivity test</td>
<td valign="top" align="right" rowspan="1" colspan="1">553</td>
<td valign="top" align="right" rowspan="1" colspan="1">57.0</td>
</tr>
<tr>
<td valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">Others</td>
<td valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
<td valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">57</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">5.9</td>
</tr>
<tr>
<td valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
<td valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">Antimicrobial synergy test</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">18</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
</tr>
<tr>
<td valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
<td valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">Additional antimicrobial sensitivity test</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">17</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
</tr>
<tr>
<td valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
<td valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">Request for not established test</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">8</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
</tr>
<tr>
<td valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
<td valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">Information about cultured microbes</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">7</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
</tr>
<tr>
<td valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
<td valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">Request for additional culture</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">3</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
</tr>
<tr>
<td valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
<td valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">Interpretation of laboratory data</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">2</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
</tr>
<tr>
<td valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
<td valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">Information about proper antibiotics</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">2</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)"></td>
</tr>
<tr>
<td valign="top" align="left" rowspan="1" colspan="3">Total</td>
<td valign="top" align="right" rowspan="1" colspan="1">971</td>
<td valign="top" align="right" rowspan="1" colspan="1">100</td>
</tr>
</tbody>
</table>
</alternatives>
</table-wrap>

<table-wrap position="float" id="T2">
<label>Table 2</label>
<caption>
  <title>Classification of consultation requests to the clinical microbiology laboratory that could not be answered</title>
</caption>
<alternatives>
<graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="lmo-6-228-i002"></graphic>
<table frame="hsides" rules="rows">
<col width="68.94%"/>
<col width="15.15%"/>
<col width="15.91%"/>
<thead>
<tr>
<th valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(219,234,185)">Reason for not being settled</th>
<th valign="top" align="center" rowspan="1" colspan="1" style="background-color:rgb(219,234,185)">Number</th>
<th valign="top" align="center" rowspan="1" colspan="1" style="background-color:rgb(219,234,185)">%</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left" rowspan="1" colspan="1">Specimen storage period expired</td>
<td valign="top" align="right" rowspan="1" colspan="1">42</td>
<td valign="top" align="right" rowspan="1" colspan="1">44.7</td>
</tr>
<tr>
<td valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">No growth of microbes in subculture</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">20</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">21.3</td>
</tr>
<tr>
<td valign="top" align="left" rowspan="1" colspan="1">No need to perform the requested examination</td>
<td valign="top" align="right" rowspan="1" colspan="1">11</td>
<td valign="top" align="right" rowspan="1" colspan="1">11.7</td>
</tr>
<tr>
<td valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">Not established examination in the laboratory</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">11</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">11.7</td>
</tr>
<tr>
<td valign="top" align="left" rowspan="1" colspan="1">Patient discharged or expired</td>
<td valign="top" align="right" rowspan="1" colspan="1">9</td>
<td valign="top" align="right" rowspan="1" colspan="1">9.6</td>
</tr>
<tr>
<td valign="top" align="left" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">Contamination of the specimen</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">1</td>
<td valign="top" align="right" rowspan="1" colspan="1" style="background-color:rgb(237,237,238)">1.0</td>
</tr>
<tr>
<td valign="top" align="left" rowspan="1" colspan="1">Total</td>
<td valign="top" align="right" rowspan="1" colspan="1">94</td>
<td valign="top" align="right" rowspan="1" colspan="1">100</td>
</tr>
</tbody>
</table>
</alternatives>
</table-wrap>

</floats-group>

</article>